nf-core/shinyngs/app @ 0.0.0-0c7146d
Summary
build and deploy Shiny apps for interactively mining differential abundance data
Get started
Add the following snippet to your workflow script to include this module.
include { SHINYNGS_APP } from 'nf-core/shinyngs/app'
License
MIT License
Name
|
SHINYNGS_APP |
|---|
meta
map
|
Groovy Map containing information on experiment, at a minimum an id. e.g. [ id:'test' ] |
|---|---|
sample
file
|
CSV-format sample sheet with sample metadata |
feature_meta
file
|
TSV-format feature (e.g. gene) metadata |
assay_files
file
|
List of TSV-format matrix files representing different measures for the same samples (e.g. raw and normalised). |
meta2
map
|
Groovy Map containing information on experiment, at a minimum an id. To match meta. e.g. [ id:'test' ] |
|---|---|
contrasts
file
|
CSV-format file with four columns identifying the sample sheet variable, reference level, treatment level, and optionally a comma-separated list of covariates used as blocking factors. |
differential_results
file
|
List of TSV-format differential analysis outputs, one per row of the contrasts file |
contrast_stats_assay
file
|
contrast statistics |
|---|
app
tuple
meta
map
|
Groovy Map containing information on experiment. e.g. [ id:'test' ] |
|---|---|
*/data.rds
file
|
The mini R script required build an application from data.rds. app/app.R
|
*/app.R
file
|
The mini R script required build an application from data.rds. app/app.R
|
versions_shinyngs
tuple
${task.process}
string
|
The name of the process |
|---|---|
shinyngs
string
|
The name of the tool |
Rscript -e "library(shinyngs); cat(as.character(packageVersion('shinyngs')))"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| shinyngs | Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion. | https://github.com/pinin4fjords/shinyngs |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:54 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fshinyngs%2Fapp/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/shinyngs/app/blobs/sha256:0a44551d6f0139ce99277cd35dc3b1cc8e5c45775a52f3eb52b02e4781841f05 |
| Size | 3.5 KB |
| Checksum | sha256:0a44551d6f0139ce99277cd35dc3b1cc8e5c45775a52f3eb52b02e4781841f05 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:54 (UTC) | 1 | 3.5 KB | - |