nf-core/sexdeterrmine @ 0.0.0-0c7146d
Summary
Calculate the relative coverage on the Gonosomes vs Autosomes from the output of samtools depth, with error bars.
Get started
Add the following snippet to your workflow script to include this module.
include { SEXDETERRMINE } from 'nf-core/sexdeterrmine'
License
MIT License
Process
Name
|
SEXDETERRMINE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
depth
file
|
Output from samtools depth (with header) *
|
sample_list_file
file
|
File containing the list of samples to be processed. |
|---|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
TSV table of relative coverages on the X and Y, with associated error bars. *.tsv
|
#2
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.json
file
|
JSON formatted table of relative coverages on the X and Y, with associated error bars. *.json
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| sexdeterrmine | A python script carry out calculate the relative coverage of X and Y chromosomes, and their associated error bars, out of capture data. | https://github.com/TCLamnidis/Sex.DetERRmine |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:35 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsexdeterrmine/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sexdeterrmine/blobs/sha256:a45c2884231d23320b7e49c43737171b2e8dc6cf11b2813c24e7f8f930be988c |
| Size | 2.7 KB |
| Checksum | sha256:a45c2884231d23320b7e49c43737171b2e8dc6cf11b2813c24e7f8f930be988c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:35 (UTC) | 1 | 2.7 KB | - |