nf-core/sequenzautils/gcwiggle @ 0.0.0-0c7146d
Summary
Sequenza-utils gc_wiggle computes the GC percentage across the sequences, and returns a file in the UCSC wiggle format, given a fasta file and a window size.
Get started
Add the following snippet to your workflow script to include this module.
include { SEQUENZAUTILS_GCWIGGLE } from 'nf-core/sequenzautils/gcwiggle'
License
MIT License
Process
Name
|
SEQUENZAUTILS_GCWIGGLE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file *.{fasta}
|
Output
2 channels
#1
wig
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.wig.gz
file
|
GC Wiggle track file *.{wig.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| sequenzautils | Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package. The program -gc_wiggle- takes fasta file as an input, computes GC percentage across the sequences and returns a file in the UCSC wiggle format. | https://sequenza-utils.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:28 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsequenzautils%2Fgcwiggle/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sequenzautils/gcwiggle/blobs/sha256:c5cdd8bafd50e13b416cbfc4af768fb1c19ba9516cc30f45d893b2de4c10b7d4 |
| Size | 2.4 KB |
| Checksum | sha256:c5cdd8bafd50e13b416cbfc4af768fb1c19ba9516cc30f45d893b2de4c10b7d4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:28 (UTC) | 1 | 2.4 KB | - |