Nextflow Registry | nf-core/sequali@0.0.0-0c7146d

nf-core/sequali @ 0.0.0-0c7146d

Sequence quality metrics for FASTQ and uBAM files.

quality_control qc preprocessing

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @irliampa @DarkoCucin

Maintainers: @irliampa @DarkoCucin

Sequence quality metrics for FASTQ and uBAM files.

Add the following snippet to your workflow script to include this module.

include { SEQUALI } from 'nf-core/sequali'

MIT License

Process

`Name`	`SEQUALI`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`reads` file	Input FASTQ(s) or uBAM file. The format is autodetected and compressed formats are supported. `*.{fastq,fq,fastq.gz,fq.gz,bam}`

Output 3 channels

#1 html tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.html` file	HTML output file. `*.{html}`

#2 json tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.json` file	JSON output file. `*.{json}`

#3 versions_sequali tuple

`${task.process}` string	The name of the process
`sequali` string	The name of the tool
`sequali --version \|& sed '1!d ; s/sequali //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
sequali	Fast sequencing quality metrics	https://github.com/rhpvorderman/sequali

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:13:22 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsequali/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sequali/blobs/sha256:8d45cd3c40077dfafd041c429823451a211ea9e0c748993ecf590bf4cfa89898
Size	2.9 KB
Checksum	sha256:8d45cd3c40077dfafd041c429823451a211ea9e0c748993ecf590bf4cfa89898
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:13:22 (UTC)		1	2.9 KB	-