nf-core/seqtk/comp @ 0.0.0-0c7146d
Summary
Computes sequence statistics from FASTQ or FASTA files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQTK_COMP } from 'nf-core/seqtk/comp'
License
MIT License
Process
Name
|
SEQTK_COMP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1' ] |
|---|---|
fastx
file
|
A FASTQ or FASTA file *.{fastq,fq,fasta,fa,fas,fna}{,.gz}
|
Output
2 channels
#1
seqtk_stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
|---|---|
*.seqtk_stats.tsv
file
|
The output TSV file summarizing sequence statistics with columns for sequence name, length, counts of A, C, G, T, and N bases, and GC content percentage." *.seqtk_stats.tsv
|
#2
versions_seqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqtk
string
|
The name of the tool |
seqtk 2>&1 | sed -n 's/^Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqtk_comp | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. The seqtk comp command computes base composition, sequence length, and GC content for quality control. | https://github.com/lh3/seqtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:07 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqtk%2Fcomp/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqtk/comp/blobs/sha256:4d37cb2911ec24b65b3f733b46ac04f4a5c1229a36724fb137cf4c84c68e59dd |
| Size | 2.4 KB |
| Checksum | sha256:4d37cb2911ec24b65b3f733b46ac04f4a5c1229a36724fb137cf4c84c68e59dd |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:07 (UTC) | 1 | 2.4 KB | - |