Nextflow Registry | nf-core/seqkit/sample@0.0.0-071d7b4

nf-core/seqkit/sample @ 0.0.0-071d7b4

Sample sequences from FASTA/FASTQ files by number or proportion

genomics fasta fastq sample subset seqkit

Latest version: 0.0.0-071d7b4

Total downloads: 1

Source: nf-core/modules

Authors: @emmcauley

Maintainers: @emmcauley

Sample sequences from FASTA/FASTQ files by number or proportion

Add the following snippet to your workflow script to include this module.

include { SEQKIT_SAMPLE } from 'nf-core/seqkit/sample'

MIT License

Process

`Name`	`SEQKIT_SAMPLE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fastx` file	Input FASTA or FASTQ file `*.{fsa,fas,fa,fasta,fastq,fq}{,.gz}`

Output 2 channels

#1 fastx tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.${extension}` file	Sampled output FASTA or FASTQ file `*.{fasta,fasta.gz,fastq,fastq.gz}`

#2 versions_seqkit tuple

`${task.process}` string	The name of the process
`seqkit` string	The name of the tool
`seqkit version \| sed 's/^.*v//'` string	The expression to obtain the version of the tool

Tool	Description	Homepage
seqkit	A cross-platform and ultrafast toolkit for FASTA/Q file manipulation	https://bioinf.shenwei.me/seqkit/

Version	0.0.0-071d7b4
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	09 Apr 2026 21:15:41 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fsample/0.0.0-071d7b4/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqkit/sample/blobs/sha256:f5db87f98717797d806b3ab4d377ea9cd0abef522cdf8e1a2fe118496ce2f1d4
Size	2.7 KB
Checksum	sha256:f5db87f98717797d806b3ab4d377ea9cd0abef522cdf8e1a2fe118496ce2f1d4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-071d7b4	09 Apr 2026 21:15:41 (UTC)		1	2.7 KB	-