nf-core/seqkit/pair @ 0.0.0-0c7146d
Summary
match up paired-end reads from two fastq files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_PAIR } from 'nf-core/seqkit/pair'
License
MIT License
Process
Name
|
SEQKIT_PAIR |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input paired-end FastQ files. |
Output
3 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.paired.fastq.gz
file
|
Paired fastq reads *.paired.fastq.gz
|
#2
unpaired_reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.unpaired.fastq.gz
file
|
Unpaired reads (optional) *.unpaired.fastq.gz
|
#3
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen. | https://bioinf.shenwei.me/seqkit/usage/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:12:45 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fpair/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqkit/pair/blobs/sha256:29ad271469ec5661ed0bdf475979556695aec0bf9e9c910c3e5a6b271528752f |
| Size | 2.5 KB |
| Checksum | sha256:29ad271469ec5661ed0bdf475979556695aec0bf9e9c910c3e5a6b271528752f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:12:45 (UTC) | 1 | 2.5 KB | - |