Nextflow Registry | nf-core/seqkit/fq2fa@0.0.0-0c7146d

nf-core/seqkit/fq2fa @ 0.0.0-0c7146d

Convert FASTQ to FASTA format

fastq fasta convert

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @d-jch

Convert FASTQ to FASTA format

Add the following snippet to your workflow script to include this module.

include { SEQKIT_FQ2FA } from 'nf-core/seqkit/fq2fa'

MIT License

Process

`Name`	`SEQKIT_FQ2FA`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`fastq` file	Sequence file in fastq format `*.{fastq,fq}.gz`

Output 2 channels

#1 fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.fa.gz` file	Sequence file in fasta format `*.{fasta,fa}.gz`

#2 versions_seqkit tuple

`${task.process}` string	The name of the process
`seqkit` string	The name of the tool
`seqkit version \| sed 's/^.*v//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
seqkit	Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.	https://github.com/shenwei356/seqkit

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:12:38 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Ffq2fa/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqkit/fq2fa/blobs/sha256:480593b2904ef5053013f009e2e0f8d3449e1f27c5cc1e9079e1a36ff26753ce
Size	2.2 KB
Checksum	sha256:480593b2904ef5053013f009e2e0f8d3449e1f27c5cc1e9079e1a36ff26753ce
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:12:38 (UTC)		1	2.2 KB	-