nf-core/scvitools/solo @ 0.0.0-0c7146d
Summary
Detect doublets in single-cell RNA-Seq data
Get started
Add the following snippet to your workflow script to include this module.
include { SCVITOOLS_SOLO } from 'nf-core/scvitools/solo'
License
MIT License
Process
Name
|
SCVITOOLS_SOLO |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
h5ad
file
|
H5AD anndata object *.h5ad
|
batch_key
string
|
Column in adata.obs to use as batch. If not provided, the entire dataset is treated as a single batch. |
|---|
max_epochs
integer
|
Maximum number of epochs to train the model. Defaults to the heuristic default. |
|---|
Output
3 channels
#1
h5ad
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.h5ad
file
|
H5AD anndata object without doublets *.h5ad
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
predictions
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.pkl
file
|
pandas dataframe containing the doublet classification *.pkl
|
| Tool | Description | Homepage |
|---|---|---|
| scvitools | A scalable toolkit for probabilistic modeling applied to single-cell omics data | https://scvi-tools.org |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:11:34 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fscvitools%2Fsolo/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/scvitools/solo/blobs/sha256:d6087232f167b5a2e99773ee8bee6d0511ea11dd4f70c26948046969e858156d |
| Size | 3.4 KB |
| Checksum | sha256:d6087232f167b5a2e99773ee8bee6d0511ea11dd4f70c26948046969e858156d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:11:34 (UTC) | 1 | 3.4 KB | - |