Nextflow Registry | nf-core/scoary@0.0.0-0c7146d

nf-core/scoary @ 0.0.0-0c7146d

Use pangenome outputs for GWAS

gwas pangenome prokaryote

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rpetit3

Maintainers: @rpetit3

Use pangenome outputs for GWAS

Add the following snippet to your workflow script to include this module.

include { SCOARY } from 'nf-core/scoary'

MIT License

Process

`Name`	`SCOARY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`genes` file	A presence/absence matrix of genes in the pan-genome `*.csv`
`traits` file	A CSV file containing trait information per-sample `*.csv`

`tree` file	A Newick formatted tree for phylogenetic analyses `*.{dnd,nwk,treefile}`

Output 2 channels

#1 csv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.csv` file	Gene associations in a CSV file per trait `*.csv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
scoary	Microbial pan-GWAS using the output from Roary	https://github.com/AdmiralenOla/Scoary

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:11:27 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fscoary/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/scoary/blobs/sha256:24c87566ca95728e6cece6c686089443066eb8543cb6f85fc89e58f41af74787
Size	2.2 KB
Checksum	sha256:24c87566ca95728e6cece6c686089443066eb8543cb6f85fc89e58f41af74787
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:11:27 (UTC)		1	2.2 KB	-