Nextflow Registry | nf-core/scds@0.0.0-0c7146d

nf-core/scds @ 0.0.0-0c7146d

Module to use scds for doublet scoring

doublet single-cell transcriptomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @cakirb

Maintainers: @cakirb

Module to use scds for doublet scoring

Add the following snippet to your workflow script to include this module.

include { SCDS } from 'nf-core/scds'

MIT License

Process

`Name`	`SCDS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`rds` file	RDS file containing filtered data (without empty droplets) in SingleCellExperiment format `*.rds`

Output 3 channels

#1 rds tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.rds` file	RDS file containing doublet scores in SingleCellExperiment format `*.rds`

#2 versions

`versions.yml` file	File containing software version `versions.yml`

#3 predictions tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.csv` file	CSV file containing doublet scores `*.csv`

Tool	Description	Homepage
scds	scds is an in-silico doublet annotation tool for single cell RNA sequencing data	https://www.bioconductor.org/packages/release/bioc/html/scds.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:11:21 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fscds/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/scds/blobs/sha256:f28e372995483a301450682e333a9efc39d2218f4aae9a1899d48488182c080b
Size	3.1 KB
Checksum	sha256:f28e372995483a301450682e333a9efc39d2218f4aae9a1899d48488182c080b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:11:21 (UTC)		1	3.1 KB	-