nf-core/samtools/bgzip @ 0.0.0-0c7146d
Summary
Outputs a FASTA file compressed with the BGZF algorithm
Get started
Add the following snippet to your workflow script to include this module.
include { SAMTOOLS_BGZIP } from 'nf-core/samtools/bgzip'
License
MIT License
Process
Name
|
SAMTOOLS_BGZIP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
FASTA file, compressed or not. *.{fa,fa.gz,fa.bz2,fa.xz,fasta,fasta.gz,fasta.bz2,fasta.xz}
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] *.{fa.gz,fasta.gz}
|
|---|---|
${output}
map
|
A FASTA file compressed with the BGZF algorithm. It will be the original file if it was already BGZF-compressed. *.{fa.gz,fasta.gz}
|
#2
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| samtools | SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. | http://www.htslib.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:09:42 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsamtools%2Fbgzip/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/samtools/bgzip/blobs/sha256:09c3a08c0ccb4c6a10dcfff16ce74e7035967f26125ef9b495c8ac19eea1d118 |
| Size | 3.0 KB |
| Checksum | sha256:09c3a08c0ccb4c6a10dcfff16ce74e7035967f26125ef9b495c8ac19eea1d118 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:09:42 (UTC) | 1 | 3.0 KB | - |