nf-core/sambamba/flagstat @ 0.0.0-0c7146d
Summary
Outputs some statistics drawn from read flags.
Get started
Add the following snippet to your workflow script to include this module.
include { SAMBAMBA_FLAGSTAT } from 'nf-core/sambamba/flagstat'
License
MIT License
Process
Name
|
SAMBAMBA_FLAGSTAT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.{bam}
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.stats
file
|
Stats file *.{stats}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| sambamba | Tools for working with SAM/BAM data | https://lomereiter.github.io/sambamba/docs/sambamba-view.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:09:26 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsambamba%2Fflagstat/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sambamba/flagstat/blobs/sha256:5043a6c5a69c614e5897caea5c5559eae7fbdc963d14079a5003ba069c8f980f |
| Size | 2.0 KB |
| Checksum | sha256:5043a6c5a69c614e5897caea5c5559eae7fbdc963d14079a5003ba069c8f980f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:09:26 (UTC) | 1 | 2.0 KB | - |