nf-core/rtgtools/pedfilter @ 0.0.0-0c7146d
Summary
Converts a PED file to VCF headers
Get started
Add the following snippet to your workflow script to include this module.
include { RTGTOOLS_PEDFILTER } from 'nf-core/rtgtools/pedfilter'
License
MIT License
Process
Name
|
RTGTOOLS_PEDFILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
The input file, can be either a PED or a VCF file *.{vcf,vcf.gz,ped}
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf.gz,ped}
file
|
The output file, can be either a filtered PED file or a VCF file containing the PED headers (needs --vcf as argument) *.{vcf.gz,ped}
|
#2
versions_rtgtools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rtgtools
string
|
The name of the tool |
rtg version | sed 's/Product: RTG Tools //; q'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rtgtools | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation | https://www.realtimegenomics.com/products/rtg-tools |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:08:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frtgtools%2Fpedfilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rtgtools/pedfilter/blobs/sha256:1a7bada6e20985e12e43958abf40729997700ae0b9c126279c9e0001b15b6959 |
| Size | 2.8 KB |
| Checksum | sha256:1a7bada6e20985e12e43958abf40729997700ae0b9c126279c9e0001b15b6959 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:08:49 (UTC) | 1 | 2.8 KB | - |