Nextflow Registry | nf-core/ribotricer/prepareorfs@0.0.0-0c7146d

nf-core/ribotricer/prepareorfs @ 0.0.0-0c7146d

Accurate detection of short and long active ORFs using Ribo-seq data

riboseq orf genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @pinin4fjords

Maintainers: @pinin4fjords

Accurate detection of short and long active ORFs using Ribo-seq data

Add the following snippet to your workflow script to include this module.

include { RIBOTRICER_PREPAREORFS } from 'nf-core/ribotricer/prepareorfs'

MIT License

Process

`Name`	`RIBOTRICER_PREPAREORFS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing reference information e.g. `[ id:'Ensembl human v.111' ]`
`fasta` file	Fasta-format sequence file for reference sequences used in the bam file `*.gtf`
`gtf` file	GTF-format annotation file for reference sequences used in the bam file `*.gtf`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 candidate_orfs tuple

`meta` map	Groovy Map containing reference information e.g. `[ id:'Ensembl human v.111' ]`
`*_candidate_orfs.tsv` file	TSV file with candidate ORFs `*.tsv`

Tool	Description	Homepage
ribotricer	Python package to detect translating ORF from Ribo-seq data	https://github.com/smithlabcode/ribotricer

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:08:13 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fribotricer%2Fprepareorfs/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ribotricer/prepareorfs/blobs/sha256:b703c6d9f4bd3a96e61bf8ccad248cb3a6df87d6e5f0609eea8f5b2b3d066419
Size	2.4 KB
Checksum	sha256:b703c6d9f4bd3a96e61bf8ccad248cb3a6df87d6e5f0609eea8f5b2b3d066419
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:08:13 (UTC)		1	2.4 KB	-