Nextflow Registry | nf-core/repeatmodeler/builddatabase@0.0.0-0c7146d

nf-core/repeatmodeler/builddatabase @ 0.0.0-0c7146d

Create a database for RepeatModeler

genomics fasta repeat

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Create a database for RepeatModeler

Add the following snippet to your workflow script to include this module.

include { REPEATMODELER_BUILDDATABASE } from 'nf-core/repeatmodeler/builddatabase'

MIT License

Process

`Name`	`REPEATMODELER_BUILDDATABASE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Fasta file `*.{fasta,fsa,fa}`

Output 2 channels

#1 db tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.*` file	Database files for repeatmodeler `${prefix}.*`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
repeatmodeler	RepeatModeler is a de-novo repeat family identification and modeling package.	https://github.com/Dfam-consortium/RepeatModeler

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:07:15 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frepeatmodeler%2Fbuilddatabase/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/repeatmodeler/builddatabase/blobs/sha256:1608ab68cb8f209b7c130b7e696035c7daf9035b6b3d772d285d9f0223025c35
Size	2.5 KB
Checksum	sha256:1608ab68cb8f209b7c130b7e696035c7daf9035b6b3d772d285d9f0223025c35
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:07:15 (UTC)		1	2.5 KB	-