nf-core/rastair/mbias @ 0.0.0-0c7146d
Summary
Assess C->T conversion as a readout for methylation on a per-read-position basis.
Get started
Add the following snippet to your workflow script to include this module.
include { RASTAIR_MBIAS } from 'nf-core/rastair/mbias'
License
MIT License
Process
Name
|
RASTAIR_MBIAS |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bai
file
|
BAM/CRAM index file *.{bai,crai}
|
#3
tuple
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file *.{fasta,fa}
|
#4
tuple
meta4
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fai
file
|
FASTA index file *.fai
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.rastair_mbias.txt
file
|
Text file from Rastair mbias containing per-read-position C->T conversion metrics. *.rastair_mbias.txt
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| rastair | A tool for rapid genome-wide assessment of positive C->T conversion as a readout for methylation. | https://bitbucket.org/bsblabludwig/rastair/src/master/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:06:53 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frastair%2Fmbias/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rastair/mbias/blobs/sha256:1e0754893dc444b946d9e23d2821aebdf64d83892c71a43d3fce1de7ada58d8f |
| Size | 2.3 KB |
| Checksum | sha256:1e0754893dc444b946d9e23d2821aebdf64d83892c71a43d3fce1de7ada58d8f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:06:53 (UTC) | 1 | 2.3 KB | - |