nf-core/racon @ 0.0.0-0c7146d
Summary
Consensus module for raw de novo DNA assembly of long uncorrected reads
Get started
Add the following snippet to your workflow script to include this module.
include { RACON } from 'nf-core/racon'
License
MIT License
Process
Name
|
RACON |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files. Racon expects single end reads *.{fastq,fastq.gz,fq,fq.gz}
|
assembly
file
|
Genome assembly to be improved *.{fasta,fa}
|
paf
file
|
Alignment in PAF format *.paf
|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
improved_assembly
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_assembly_consensus.fasta.gz
file
|
Improved genome assembly *_assembly_consensus.fasta.gz
|
| Tool | Description | Homepage |
|---|---|---|
| racon | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. | https://github.com/lbcb-sci/racon |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:06:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fracon/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/racon/blobs/sha256:f3d49f665b7906654226c1e217e044eeeea3a15c94a46b087b85cf9447eb52a2 |
| Size | 2.2 KB |
| Checksum | sha256:f3d49f665b7906654226c1e217e044eeeea3a15c94a46b087b85cf9447eb52a2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:06:44 (UTC) | 1 | 2.2 KB | - |