nf-core/qsv/cat @ 0.0.0-0c7146d
Summary
Concatenate two or more CSV (or TSV) tables into a single table
Get started
Add the following snippet to your workflow script to include this module.
include { QSV_CAT } from 'nf-core/qsv/cat'
License
MIT License
Process
Name
|
QSV_CAT |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
csv
file
|
CSV/TSV formatted files *.{csv,tsv}
|
mode
string
|
Concatenation mode (rows, columns or rowskey) ^(rows|columns|rowskey)$
|
|---|
out_format
string
|
Output format (.csv for comma delimiter, .ssv for semicolon, and .tsv or .tab for tab) ^(csv|ssv|tsv|tab)$
|
|---|
skip_input_format_check
boolean
|
Skip input format check (by default QSV checks input format based on file extension) |
|---|
Output
2 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.${out_format}
file
|
Concatenated CSV/TSV file *.{csv,tsv,tab,ssv}
|
#2
versions_qsv
tuple
${task.process}
string
|
The name of the process |
|---|---|
qsv
string
|
The name of the tool |
qsv --version | cut -d' ' -f2 | cut -d'-' -f1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| csvtk | Blazing-fast Data-Wrangling toolkit | https://qsv.dathere.com |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:06:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fqsv%2Fcat/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/qsv/cat/blobs/sha256:df70de0b21b7e01a30a4d4003e4e1d28f86d335c19ac37e85f40240ae3c2fafe |
| Size | 2.7 KB |
| Checksum | sha256:df70de0b21b7e01a30a4d4003e4e1d28f86d335c19ac37e85f40240ae3c2fafe |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:06:25 (UTC) | 1 | 2.7 KB | - |