Nextflow Registry | nf-core/pygenprop/info@0.0.0-0c7146d

nf-core/pygenprop/info @ 0.0.0-0c7146d

Display a summary of the contents of a Micromeda file, including the number of samples, genome property assignments, step assignments, InterProScan matches, and protein sequences.

genome properties functional annotation interproscan pathway analysis micromeda summary

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Summary

Display a summary of the contents of a Micromeda file, including the number of samples, genome property assignments, step assignments, InterProScan matches, and protein sequences.

Get started

Add the following snippet to your workflow script to include this module.

include { PYGENPROP_INFO } from 'nf-core/pygenprop/info'

License

MIT License

Process

`Name`	`PYGENPROP_INFO`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`meda` file	Micromeda SQLite database containing Genome Properties assignments (output of pygenprop build) `*.micro`

Output 3 channels

#1 info tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.info` file	Plain-text summary report of the Micromeda file contents, including counts of samples, genome property assignments, step assignments, InterProScan matches, and protein sequences `*.info`

#2 versions_python tuple

`${task.process}` string	The name of the process
`python` string	The name of the tool
`python -V \| sed "s/Python //g"` eval	The expression to obtain the version of the tool

#3 versions_pygenprop tuple

`${task.process}` string	The name of the process
`pygenprop` string	The name of the tool
`"1.1"` string	The expression to obtain the version of the tool

Tool	Description	Homepage
pygenprop	A python library for programmatic usage of EBI InterPro Genome Properties.	https://github.com/Micromeda/pygenprop

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:06:08 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpygenprop%2Finfo/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pygenprop/info/blobs/sha256:0aa6aca96b4492fc9010f80f2408af920f16341d85bfbfda5361e8fd1018bb42
Size	2.7 KB
Checksum	sha256:0aa6aca96b4492fc9010f80f2408af920f16341d85bfbfda5361e8fd1018bb42
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:06:08 (UTC)		1	2.7 KB	-