Nextflow Registry | nf-core/prinseqplusplus@0.0.0-0c7146d

nf-core/prinseqplusplus @ 0.0.0-0c7146d

PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter, reformat or trim genomic and metagenomic sequence data

fastq fasta filter trim

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter, reformat or trim genomic and metagenomic sequence data

Add the following snippet to your workflow script to include this module.

include { PRINSEQPLUSPLUS } from 'nf-core/prinseqplusplus'

MIT License

Process

`Name`	`PRINSEQPLUSPLUS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.

Output 5 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.log` file	Verbose level 2 STDOUT information in a log file `*.log`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 bad_reads tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`_bad_out.fastq.gz` file	Reads without not passing filter(s) in gzipped FASTQ format `*_bad_out_{R1,R2}.fastq.gz`

#4 good_reads tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`_good_out.fastq.gz` file	Reads passing filter(s) in gzipped FASTQ format `*_good_out_{R1,R2}.fastq.gz`

#5 single_reads tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`_single_out.fastq.gz` file	Single reads without the pair passing filter(s) in gzipped FASTQ format `*_single_out_{R1,R2}.fastq.gz`

Tool	Description	Homepage
prinseqplusplus	PRINSEQ++ - Multi-threaded C++ sequence cleaning	https://github.com/Adrian-Cantu/PRINSEQ-plus-plus

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:05:14 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fprinseqplusplus/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/prinseqplusplus/blobs/sha256:5693ecfd09d2053fc2e6f793def8489084b5c868949774b190e6eb2cc65654bb
Size	2.8 KB
Checksum	sha256:5693ecfd09d2053fc2e6f793def8489084b5c868949774b190e6eb2cc65654bb
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:05:14 (UTC)		1	2.8 KB	-