nf-core/pretextsnapshot @ 0.0.0-0c7146d
Summary
A module to generate images from Pretext contact maps.
Get started
Add the following snippet to your workflow script to include this module.
include { PRETEXTSNAPSHOT } from 'nf-core/pretextsnapshot'
License
MIT License
Process
Name
|
PRETEXTSNAPSHOT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pretext_map
file
|
pretext hic map *.pretext
|
order_file
file
|
Custom ordering of scaffolds in pretext snapshot output. This is a single column file of scaffold names |
Output
2 channels
#1
image
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{jpeg,png,bmp}
file
|
image of a hic contact map *.{jpeg,png,bmp}
|
#2
versions_pretextsnapshot
tuple
${task.process}
string
|
Name of the process |
|---|---|
PretextSnapshot
string
|
Name of the tool |
PretextSnapshot --version | sed 's/^.*PretextSnapshot Version //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| pretextsnapshot | Commandline image generator for Pretext Hi-C genome contact maps. | https://github.com/wtsi-hpag/PretextSnapshot |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:05:12 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpretextsnapshot/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pretextsnapshot/blobs/sha256:28babbdf4ffd7e68c32780973884ba328e66b54ea4f112f55dfe82dadb893cd1 |
| Size | 3.3 KB |
| Checksum | sha256:28babbdf4ffd7e68c32780973884ba328e66b54ea4f112f55dfe82dadb893cd1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:05:12 (UTC) | 1 | 3.3 KB | - |