nf-core/preseq/lcextrap @ 0.0.0-0c7146d
Summary
Software for predicting library complexity and genome coverage in high-throughput sequencing
Get started
Add the following snippet to your workflow script to include this module.
include { PRESEQ_LCEXTRAP } from 'nf-core/preseq/lcextrap'
License
MIT License
Process
Name
|
PRESEQ_LCEXTRAP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Log file containing stderr produced by Preseq *.{log}
|
#2
lc_extrap
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.lc_extrap.txt
file
|
File containing output of Preseq lcextrap *.{lc_extrap.txt}
|
#3
versions_preseq
tuple
${task.process}
string
|
The name of the process |
|---|---|
preseq
string
|
The name of the tool |
preseq 2>&1 | sed -n 's/.*Version: \(.*\)/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| preseq | Software for predicting library complexity and genome coverage in high-throughput sequencing | http://smithlabresearch.org/software/preseq/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:05:04 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpreseq%2Flcextrap/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/preseq/lcextrap/blobs/sha256:8884edd4abd773af4e43a0bf3acd4ab59af58b0a4caa2694f06e5f7ef10916db |
| Size | 2.6 KB |
| Checksum | sha256:8884edd4abd773af4e43a0bf3acd4ab59af58b0a4caa2694f06e5f7ef10916db |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:05:04 (UTC) | 1 | 2.6 KB | - |