nf-core/plink2/filter @ 0.0.0-0c7146d
Summary
Filters plink bfiles or pfiles with filters such as maf or var
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK2_FILTER } from 'nf-core/plink2/filter'
License
MIT License
Name
|
PLINK2_FILTER |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
plink_genotype_file
file
|
PLINK binary genotype table file or PLINK 2 binary genotype table file *.{bed,pgen}
|
plink_variant_file
file
|
PLINK extended MAP file or PLINK 2 variant information file *.{bim,pvar}
|
plink_sample_file
file
|
PLINK sample information file or PLINK 2 sample information file *.{fam,psam}
|
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
PLINK binary allelic genotype table *.bed
|
bim
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bim
file
|
PLINK extended map file *.bim
|
fam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fam
file
|
PLINK sample information file *.fam
|
pgen
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pgen
file
|
PLINK 2 binary genotype table *.pgen
|
psam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.psam
file
|
PLINK 2 sample information file *.psam
|
pvar
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pvar
file
|
PLINK 2 variant information file *.pvar
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| plink2 | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner | http://www.cog-genomics.org/plink/2.0/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:04:27 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fplink2%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/plink2/filter/blobs/sha256:20064a0570ba2221f24c360abe229b034c7d0c01943cff331e0a4555f2e238a2 |
| Size | 3.4 KB |
| Checksum | sha256:20064a0570ba2221f24c360abe229b034c7d0c01943cff331e0a4555f2e238a2 |
| Downloads | 1 |
| Version | Date | Status | Downloads |
|---|