nf-core/perbase @ 0.0.0-0c7146d
Summary
Per-base metrics on BAM/CRAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { PERBASE } from 'nf-core/perbase'
License
MIT License
Process
Name
|
PERBASE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM/CRAM file *.{bam,cram}
|
index
file
|
BAI/CRAI file *.{bai,crai}
|
bed
file
|
bed file containing regions of interest, where only bases from the given regions will be reported *.{bed}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fasta
file
|
Reference fasta (optional) *.{fasta,fa}
|
fai
file
|
FAI file (optional) *.{fai}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv.gz
file
|
TSV file *.{tsv.gz}
|
#2
versions_perbase
tuple
${task.process}
string
|
The name of the process |
|---|---|
perbase
string
|
The name of the tool |
perbase --version |& sed "1!d ; s/perbase //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| perbase | Per-base metrics on BAM/CRAM files. | https://github.com/sstadick/perbase |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:02:03 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fperbase/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/perbase/blobs/sha256:2d977381e3a18204de68585a1cde300255f0e3b667dbb3ad2eb09b3bb3886ff0 |
| Size | 3.0 KB |
| Checksum | sha256:2d977381e3a18204de68585a1cde300255f0e3b667dbb3ad2eb09b3bb3886ff0 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:02:03 (UTC) | 1 | 3.0 KB | - |