Nextflow Registry | nf-core/paragraph/vcf2paragraph@0.0.0-0c7146d

nf-core/paragraph/vcf2paragraph @ 0.0.0-0c7146d

Convert a VCF file to a JSON graph

vcf json structural_variants

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

Convert a VCF file to a JSON graph

Add the following snippet to your workflow script to include this module.

include { PARAGRAPH_VCF2PARAGRAPH } from 'nf-core/paragraph/vcf2paragraph'

MIT License

Process

`Name`	`PARAGRAPH_VCF2PARAGRAPH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`vcf` file	The VCF/BCF file `*.{vcf,bcf}(.gz)?`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fasta` file	Reference genome VCF was generated against `*.{fasta,fna,fa}`

Output 2 channels

#1 graph tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.json.gz` file	The created graph in BGZIP format `*.json.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
paragraph	Graph realignment tools for structural variants	https://github.com/Illumina/paragraph

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:01:25 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fparagraph%2Fvcf2paragraph/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/paragraph/vcf2paragraph/blobs/sha256:23fd9ba75261429a5f689bd8ece396106be41b27f7230054dbedf32434c0a1a3
Size	2.6 KB
Checksum	sha256:23fd9ba75261429a5f689bd8ece396106be41b27f7230054dbedf32434c0a1a3
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:01:25 (UTC)		1	2.6 KB	-