Nextflow Registry | nf-core/parabricks/starfusion@0.0.0-0c7146d

nf-core/parabricks/starfusion @ 0.0.0-0c7146d

This tool uses the GPU to perform fusion calling for RNA-Seq samples, utilizing the STAR-Fusion algorithm. This requires input of a genome resource library, in accordance with the original STAR-Fusion tool, and outputs candidate fusion transcripts.

fusion starfusion rna

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @gburnett-nvidia

Maintainers: @gburnett-nvidia

Summary

Get started

Add the following snippet to your workflow script to include this module.

include { PARABRICKS_STARFUSION } from 'nf-core/parabricks/starfusion'

License

MIT License

Process

`Name`	`PARABRICKS_STARFUSION`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`chimeric_junction` file	Path to the Chimeric.out.junction file produced by STAR `*/Chimeric.out.junction`

#2 tuple

`meta1` map	Groovy Map containing genome lib dir information
`genome_lib_dir` directory	Path to a genome resource library directory. The indexing required to run STAR should be completed by the user beforehand. `*`

Output 3 channels

#1 fusions tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fusion_predictions.tsv` file	Fusion events from STAR-fusion `fusion_predictions.tsv`

#2 abridged tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fusion_predictions.abridged.tsv` file	Abridged version of fusion events from STAR-fusion `fusion_predictions.abridged.tsv`

#3 versions_parabricks tuple

`${task.process}` string	The process the versions were collected from
`parabricks` string	The tool name
`pbrun version \| grep -m1 '^pbrun:' \| sed 's/^pbrun:[[:space:]]*//'` string	The command used to generate the version of the tool

Tool	Description	Homepage
parabricks	NVIDIA Clara Parabricks GPU-accelerated genomics tools	https://www.nvidia.com/en-us/clara/genomics/

Version	0.0.0-0c7146d
Commit ID	0c7146d85582628b5d1034504702fa808632b1af
Release Date	08 Apr 2026 19:01:18 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fparabricks%2Fstarfusion/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/parabricks/starfusion/blobs/sha256:c80043a76b096b2df7d86efe363acc547dda3f129554f90566c4974689d575f0
Size	3.6 KB
Checksum	sha256:c80043a76b096b2df7d86efe363acc547dda3f129554f90566c4974689d575f0
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:01:18 (UTC)		1	3.6 KB	-