Nextflow Registry | nf-core/parabricks/dbsnp@0.0.0-0c7146d

nf-core/parabricks/dbsnp @ 0.0.0-0c7146d

NVIDIA Clara Parabricks GPU-accelerated variant calls annotation based on dbSNP database

annotation dbsnp vcf germline

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @Furentsu

Maintainers: @famosab

NVIDIA Clara Parabricks GPU-accelerated variant calls annotation based on dbSNP database

Add the following snippet to your workflow script to include this module.

include { PARABRICKS_DBSNP } from 'nf-core/parabricks/dbsnp'

MIT License

Process

`Name`	`PARABRICKS_DBSNP`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`vcf_file` file	VCF file undergoing annotation. `*.vcf`
`dbsnp_file` file	dbSNP file required for annotation. `*.vcf.gz`
`tabix_file` file	dbSNP file index. `*.vcf.gz.tbi`

Output 3 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.vcf` file	VCF file. `*{.vcf}`

#2 compatible_versions

`compatible_versions.yml` file	File containing info on compatible CPU-based software versions. `compatible_versions.yml`

#3 versions_parabricks tuple

`${task.process}` string	The process the versions were collected from
`parabricks` string	The tool name
`pbrun version \| grep -m1 '^pbrun:' \| sed 's/^pbrun:[[:space:]]*//'` string	The command used to generate the version of the tool

Tool	Description	Homepage
parabricks	NVIDIA Clara Parabricks GPU-accelerated genomics tools	https://www.nvidia.com/en-us/clara/genomics/

Version	0.0.0-0c7146d
Commit ID	0c7146d85582628b5d1034504702fa808632b1af
Release Date	08 Apr 2026 19:00:59 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fparabricks%2Fdbsnp/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/parabricks/dbsnp/blobs/sha256:321f17387803d650fdf60d513b64f23c1ea3caee06603f3c4db71ec21eb7eb48
Size	2.8 KB
Checksum	sha256:321f17387803d650fdf60d513b64f23c1ea3caee06603f3c4db71ec21eb7eb48
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:00:59 (UTC)		1	2.8 KB	-