nf-core/pangolin/updatedata @ 0.0.0-0c7146d
Summary
Phylogenetic Assignment of Named Global Outbreak LINeages
Get started
Add the following snippet to your workflow script to include this module.
include { PANGOLIN_UPDATEDATA } from 'nf-core/pangolin/updatedata'
License
MIT License
Process
Name
|
PANGOLIN_UPDATEDATA |
|---|
Input
1 channel
dbname
string
|
Name of directory to store the most recent pangolin dataset. |
|---|
Output
2 channels
#1
db
${prefix}
file
|
Directory containing downloaded data with directory naming being the user provided dbname or prefix. |
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pangolin | Phylogenetic Assignment of Named Global Outbreak LINeages | https://github.com/cov-lineages/pangolin#pangolearn-description |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:00:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpangolin%2Fupdatedata/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pangolin/updatedata/blobs/sha256:6c481c05747d8463b96b2c4ae5bd5d0583b3c9a866cf72d2134dea5edf0e7485 |
| Size | 2.1 KB |
| Checksum | sha256:6c481c05747d8463b96b2c4ae5bd5d0583b3c9a866cf72d2134dea5edf0e7485 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:00:56 (UTC) | 1 | 2.1 KB | - |