nf-core/pairtools/split @ 0.0.0-1d8acb2
Summary
Split a .pairsam file into .pairs and .sam.
Get started
Add the following snippet to your workflow script to include this module.
include { PAIRTOOLS_SPLIT } from 'nf-core/pairtools/split'
License
MIT License
Process
Name
|
PAIRTOOLS_SPLIT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pairs
file
|
pairsam file |
Output
3 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Output BAM file *.bam
|
#2
pairs
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.split.pairs.gz
file
|
Duplicates removed pairs *.{pairs.gz}
|
#3
versions_pairtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
pairtools
string
|
The name of the tool |
pairtools --version | sed 's/.*pairtools.*version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| pairtools | CLI tools to process mapped Hi-C data | http://pairtools.readthedocs.io/ |
| Version | 0.0.0-1d8acb2 |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 10:25:59 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpairtools%2Fsplit/0.0.0-1d8acb2/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pairtools/split/blobs/sha256:5702639cf1eafe8b8567fcb1aaf3b2e8b6ab7f261bcac114f61495d757ddf848 |
| Size | 2.2 KB |
| Checksum | sha256:5702639cf1eafe8b8567fcb1aaf3b2e8b6ab7f261bcac114f61495d757ddf848 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-1d8acb2 | 08 Apr 2026 10:25:59 (UTC) | 1 | 2.2 KB | - |