Nextflow Registry | nf-core/orthofinder@0.0.0-0c7146d

nf-core/orthofinder @ 0.0.0-0c7146d

OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics.

genomics orthogroup orthologs gene duplication tree phylogeny

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp @chriswyatt1

Maintainers: @GallVp @chriswyatt1

OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics.

Add the following snippet to your workflow script to include this module.

include { ORTHOFINDER } from 'nf-core/orthofinder'

MIT License

Process

`Name`	`ORTHOFINDER`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fastas` list	Input fasta files `*.{fa,faa,fasta,fas,pep}`

#2 tuple

`meta2` map	Groovy Map containing a name e.g. `[ id:'folder1' ]`
`prior_run` directory	A folder containing a previous WorkingDirectory from OrthoFinder.

Output 3 channels

#1 working tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`$prefix/WorkingDirectory` directory	OrthoFinder WorkingDirectory (used for the resume function)

#2 orthofinder tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`$prefix` directory	OrthoFinder output directory

#3 versions_orthofinder tuple

`${task.process}` string	The name of the process
`orthofinder` string	The name of the tool
`NO_COLOR=1 orthofinder --version \| cut -d 'v' -f2 \| perl -pe 's/\e\[[0-9;]*m//g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
orthofinder	Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!	https://github.com/davidemms/OrthoFinder

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:00:13 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Forthofinder/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/orthofinder/blobs/sha256:2e87c02972f5d647266417793aa22b38f655fed03078e39f15604d058c1d4120
Size	3.3 KB
Checksum	sha256:2e87c02972f5d647266417793aa22b38f655fed03078e39f15604d058c1d4120
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:00:13 (UTC)		1	3.3 KB	-