Nextflow Registry | nf-core/opt/stat@0.0.0-0c7146d

nf-core/opt/stat @ 0.0.0-0c7146d

stat summarizes opt binding predictions

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @khersameesh24

Maintainers: @khersameesh24

stat summarizes opt binding predictions

Add the following snippet to your workflow script to include this module.

include { OPT_STAT } from 'nf-core/opt/stat'

MIT License

Process

`Name`	`OPT_STAT`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing information of the probe targets generated from the panel sequences with `opt track` e.g. `[ id:'breast_cancer_probe_panel_sequences' ]`
`probe_targets` file	Generated probe targets `*.tsv`

#2 tuple

`meta2` map	Groovy Map containing information of the forward oriented fasta generated with the probes panel sequences 'opt flip' e.g. `[ id:'breast_cancer_probe_panel_sequences' ]`
`fwd_oriented_probes` file	The forward oriented fasta file `*.fa`

`gene_synonyms` file	Gene synonyms that may have been counted as off-targets but simply differ in name (optional input) `*.csv`

Output 2 channels

#1 summary tuple

`meta` map	Groovy Map containing summary of the forward oriented probes generated with the panel sequences 'opt flip and track' e.g. `[ id:'breast_cancer_probe_panel_sequences' ]`
`${meta.id}/collapsed_summary.tsv` file	tsv file containing the summary stats `*.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
opt	opt is a simple program that aligns probe sequences to transcript sequences to detect potential off-target probe activity	https://github.com/JEFworks-Lab/off-target-probe-tracker

Version	0.0.0-0c7146d
Commit ID	4e8e48c04e24c2159a5589a36bae0f038809cd48
Release Date	08 Apr 2026 19:00:06 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fopt%2Fstat/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/opt/stat/blobs/sha256:42ecb99f4f613d560bc7ed33e4cb71aab113aeebd7e4126ef3ffa4ebfdc3ab67
Size	2.4 KB
Checksum	sha256:42ecb99f4f613d560bc7ed33e4cb71aab113aeebd7e4126ef3ffa4ebfdc3ab67
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:00:06 (UTC)		1	2.4 KB	-