Nextflow Registry | nf-core/odgi/layout@0.0.0-0c7146d

nf-core/odgi/layout @ 0.0.0-0c7146d

Establish 2D layouts of the graph using path-guided stochastic gradient descent. The graph must be sorted and id-compacted.

variation graph pangenome graph gfa graph layout

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @subwaystation

Maintainers: @subwaystation

Establish 2D layouts of the graph using path-guided stochastic gradient descent. The graph must be sorted and id-compacted.

Add the following snippet to your workflow script to include this module.

include { ODGI_LAYOUT } from 'nf-core/odgi/layout'

MIT License

Process

`Name`	`ODGI_LAYOUT`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`graph` file	Pangenome graph in GFA v1.0 format or in ODGI binary format `*.{gfa,og}`

Output 3 channels

#1 lay tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.lay` file	File containing a 2D layout of a pangenome graph in a binary format. Usually ends with '.lay'. Optional output specified by the `--out FILE` argument. Either this or the TSV layout output must be specified. `*.{lay}`

#2 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	File containing a 2D layout of a pangenome graph in TSV format. Optional output specified by the `--tsv FILE` argument. Either this or the binary layout output must be specified. `*.{tsv}`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
odgi	An optimized dynamic genome/graph implementation	https://github.com/pangenome/odgi

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:59:25 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fodgi%2Flayout/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/odgi/layout/blobs/sha256:a2bf2ebf54d275a2ebf86664ac4b7f260180fbc581fd5f697fe426b28100869b
Size	2.4 KB
Checksum	sha256:a2bf2ebf54d275a2ebf86664ac4b7f260180fbc581fd5f697fe426b28100869b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:59:25 (UTC)		1	2.4 KB	-