nf-core/nucmer @ 0.0.0-0c7146d
Summary
NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
Get started
Add the following snippet to your workflow script to include this module.
include { NUCMER } from 'nf-core/nucmer'
License
MIT License
Process
Name
|
NUCMER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
ref
file
|
FASTA file of the reference sequence *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
query
file
|
FASTA file of the query sequence *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
3 channels
#1
delta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.delta
file
|
File containing coordinates of matches between reference and query |
#2
coords
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.coords
file
|
NUCmer1.1 coords output file *.{coords}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| nucmer | NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences. | http://mummer.sourceforge.net/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:59:14 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fnucmer/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/nucmer/blobs/sha256:8f5ec829b338b2887eb6c79b0325031810011f5dd9d145ecc1893f1db5345547 |
| Size | 3.1 KB |
| Checksum | sha256:8f5ec829b338b2887eb6c79b0325031810011f5dd9d145ecc1893f1db5345547 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:59:14 (UTC) | 1 | 3.1 KB | - |