Nextflow Registry | nf-core/myloasm@0.0.0-0c7146d

nf-core/myloasm @ 0.0.0-0c7146d

Myloasm is a de novo metagenome assembler for long-read sequencing data. It takes sequencing reads and outputs polished contigs in a single command.

assembly metagenome long-read pacbio nanopore

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Myloasm is a de novo metagenome assembler for long-read sequencing data. It takes sequencing reads and outputs polished contigs in a single command.

Add the following snippet to your workflow script to include this module.

include { MYLOASM } from 'nf-core/myloasm'

MIT License

Process

`Name`	`MYLOASM`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`reads` file	Input long reads in FASTQ or FASTA format (FASTQ preferred for base quality information) `*.{fastq,fq,fastq.gz,fq.gz,fasta,fa,fasta.gz,fa.gz}`

Output 8 channels

#1 gfa tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}/final_contig_graph.gfa` file	Final contig graph in GFA format `final_contig_graph.gfa`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}/*.log` file	MyloAsm log files containing assembly process information `*.log`

#3 contigs tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}/assembly_primary.fa` file	Primary assembly contigs in FASTA format `assembly_primary.fa`

#4 mapping tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}/3-mapping/map_to_unitigs.paf.gz` file	Mapping of reads to unitigs in PAF format (compressed) `map_to_unitigs.paf.gz`

#5 results tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}` directory	Directory containing all myloasm output files and folders `*`

#6 contigs_alt tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}/alternate_assemblies/assembly_alternate.fa` file	Alternative assembly contigs in FASTA format `assembly_alternate.fa`

#7 contigs_dup tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}/alternate_assemblies/duplicated_contigs.fa` file	Duplicated contigs in FASTA format `duplicated_contigs.fa`

#8 versions_myloasm tuple

`${task.process}` string	The name of the process
`myloasm` string	The name of the tool
`myloasm --version \| sed 's/.* //'` eval	The expression used to obtain the version of the tool

Tool	Description	Homepage
myloasm	Myloasm is a long-read assembler for metagenomes	https://myloasm-docs.github.io

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:58:15 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmyloasm/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/myloasm/blobs/sha256:90830f8bb5cf85781ce226b1f30e11330df79cad5829508963b285116c62d026