nf-core/mykrobe/predict @ 0.0.0-0c7146d
Summary
AMR predictions for supported species
Get started
Add the following snippet to your workflow script to include this module.
include { MYKROBE_PREDICT } from 'nf-core/mykrobe/predict'
License
MIT License
Process
Name
|
MYKROBE_PREDICT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
seqs
file
|
BAM or FASTQ file *.{bam,fastq.gz,fq.gz}
|
species
string
|
Species to make AMR prediction against *
|
|---|
Output
3 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.csv
file
|
AMR predictions in CSV format *.csv
|
#2
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.json
file
|
AMR predictions in JSON format *.json
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mykrobe | Antibiotic resistance prediction in minutes | http://www.mykrobe.com/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:58:14 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmykrobe%2Fpredict/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mykrobe/predict/blobs/sha256:0120796903f47c2b098907085e975141215edb754f01d745275716a2112516a1 |
| Size | 2.4 KB |
| Checksum | sha256:0120796903f47c2b098907085e975141215edb754f01d745275716a2112516a1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:58:14 (UTC) | 1 | 2.4 KB | - |