nf-core/mudskipper/index @ 0.0.0-0c7146d
Summary
Build and store a gtf index, which is useful for converting genomic BAM/SAM files to transcriptomic BAM/SAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { MUDSKIPPER_INDEX } from 'nf-core/mudskipper/index'
License
MIT License
Process
Name
|
MUDSKIPPER_INDEX |
|---|
Input
1 channel
gtf
file
|
Transcript annotation file. *.{gtf,gff,gff3}
|
|---|
Output
2 channels
#1
index
index/
directory
|
Mudskipper index for running mudskipper conversion tools */
|
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mudskipper | mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files. | https://github.com/OceanGenomics/mudskipper |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:57:53 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmudskipper%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mudskipper/index/blobs/sha256:163b6a17f2485d8878834ecf7b734b472631abdc603d13a4c96deccaf5f83976 |
| Size | 2.1 KB |
| Checksum | sha256:163b6a17f2485d8878834ecf7b734b472631abdc603d13a4c96deccaf5f83976 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:57:53 (UTC) | 1 | 2.1 KB | - |