Nextflow Registry | nf-core/modkit/bedmethyltobigwig@0.0.0-0c7146d

nf-core/modkit/bedmethyltobigwig @ 0.0.0-0c7146d

Convert a bedMethyl file to bigWig format using modkit

long-read ont methylation

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @Schmytzi

Maintainers: @Schmytzi

Convert a bedMethyl file to bigWig format using modkit

Add the following snippet to your workflow script to include this module.

include { MODKIT_BEDMETHYLTOBIGWIG } from 'nf-core/modkit/bedmethyltobigwig'

MIT License

Process

`Name`	`MODKIT_BEDMETHYLTOBIGWIG`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bedmethyl` file	bedMethyl file `*.{bed,bed.gz}`

#2 tuple

`meta2` map	Groovy Map containing genome information e.g. `[ id:'hg38' ]`
`chromsizes` file	Tab-separated file with chromosome names and sizes or fai index `*.{tsv,fai}`

`modcodes` list	List of modification codes to include in the output bigWig file. Can be either a list of strings or a string containing a comma-separated list.

Output 2 channels

#1 bw tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.bw` file	bigWig file `*.{bw}`

#2 versions_modkit tuple

`${task.process}` string	The name of the process
`modkit` string	The name of the tool
`modkit --version \| sed 's/modkit //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
modkit	A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.	https://nanoporetech.github.io/modkit/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:52 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmodkit%2Fbedmethyltobigwig/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/modkit/bedmethyltobigwig/blobs/sha256:7c098e8cca3800649045360029360e2cde822874fa9f6b5f2182b9fb81c06a67
Size	2.7 KB
Checksum	sha256:7c098e8cca3800649045360029360e2cde822874fa9f6b5f2182b9fb81c06a67
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:52 (UTC)		1	2.7 KB	-