Nextflow Registry | nf-core/mmseqs/easysearch@0.0.0-0c7146d

nf-core/mmseqs/easysearch @ 0.0.0-0c7146d

Searches for the sequences of a fasta file in a database using MMseqs2

protein sequence databases searching mmseqs2

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @luisas

Maintainers: @luisas

Searches for the sequences of a fasta file in a database using MMseqs2

Add the following snippet to your workflow script to include this module.

include { MMSEQS_EASYSEARCH } from 'nf-core/mmseqs/easysearch'

MIT License

Process

`Name`	`MMSEQS_EASYSEARCH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing input fasta file information e.g. `[ id:'test' ]`
`fasta` file	Fasta file `*.{fa,fasta}`

#2 tuple

`meta2` map	Groovy Map containing database information e.g. `[ id:'test' ]`
`db_target` directory	an MMseqs2 database with target data, e.g. uniref90

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing input fasta file information e.g. `[ id:'test']`
`${prefix}.tsv` file	tsv file with the results of the search `*.{tsv}`

#2 versions_mmseqs tuple

`${task.process}` string	The name of the process
`mmseqs` string	The name of the tool
`mmseqs version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
mmseqs	MMseqs2: ultra fast and sensitive sequence search and clustering suite	https://github.com/soedinglab/MMseqs2

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:37 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Feasysearch/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mmseqs/easysearch/blobs/sha256:9f5ed39d4eac067a915e78a9bee5e9e8f316f703e358f035325d4cd6caf50e7b
Size	2.7 KB
Checksum	sha256:9f5ed39d4eac067a915e78a9bee5e9e8f316f703e358f035325d4cd6caf50e7b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:37 (UTC)		1	2.7 KB	-