Nextflow Registry | nf-core/mmseqs/createindex@0.0.0-0c7146d

nf-core/mmseqs/createindex @ 0.0.0-0c7146d

Creates sequence index for mmseqs database

protein sequence databases clustering searching indexing

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @JoseEspinosa

Maintainers: @JoseEspinosa

Creates sequence index for mmseqs database

Add the following snippet to your workflow script to include this module.

include { MMSEQS_CREATEINDEX } from 'nf-core/mmseqs/createindex'

MIT License

Process

`Name`	`MMSEQS_CREATEINDEX`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`db` directory	Directory containing the DB to be indexed `*`

Output 2 channels

#1 db_indexed tuple

`meta` directory	Directory containing the DB and the generated indexes `*`
`db` directory	Directory containing the DB and the generated indexes `*`

#2 versions_mmseqs tuple

`${task.process}` string	The name of the process
`mmseqs` string	The name of the tool
`mmseqs version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
mmseqs	MMseqs2: ultra fast and sensitive sequence search and clustering suite	https://github.com/soedinglab/MMseqs2

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:27 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Fcreateindex/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mmseqs/createindex/blobs/sha256:e762e7c245ad9ecb0ca65faf7e85bae4f5e18cf0164dd0d93a0ffdadaac322cd
Size	3.8 KB
Checksum	sha256:e762e7c245ad9ecb0ca65faf7e85bae4f5e18cf0164dd0d93a0ffdadaac322cd
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:27 (UTC)		1	3.8 KB	-