Nextflow Registry | nf-core/mmseqs/createdb@0.0.0-0c7146d

nf-core/mmseqs/createdb @ 0.0.0-0c7146d

Create an MMseqs database from an existing FASTA/Q file

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @Joon-Klaps

Maintainers: @Joon-Klaps @vagkaratzas

Create an MMseqs database from an existing FASTA/Q file

Add the following snippet to your workflow script to include this module.

include { MMSEQS_CREATEDB } from 'nf-core/mmseqs/createdb'

MIT License

Process

`Name`	`MMSEQS_CREATEDB`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`sequence` file	Input sequences in FASTA/Q (zipped or unzipped) format to parse into an mmseqs database `*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,fastq,fastq.gz,fq,fq.gz}`

Output 2 channels

#1 db tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`${prefix}/` directory	The created MMseqs2 database

#2 versions_mmseqs tuple

`${task.process}` string	The name of the process
`mmseqs` string	The name of the tool
`mmseqs version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
mmseqs	MMseqs2: ultra fast and sensitive sequence search and clustering suite	https://github.com/soedinglab/MMseqs2

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:25 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Fcreatedb/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mmseqs/createdb/blobs/sha256:9797570135d25ff1ebba4440f485dc58bfd8af81437d80d3b1874cdd5d100844
Size	2.9 KB
Checksum	sha256:9797570135d25ff1ebba4440f485dc58bfd8af81437d80d3b1874cdd5d100844
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:25 (UTC)		1	2.9 KB	-