nf-core/mlst @ 0.0.0-0c7146d
Summary
Run Torsten Seemann's classic MLST on a genome assembly
Get started
Add the following snippet to your workflow script to include this module.
include { MLST } from 'nf-core/mlst'
License
MIT License
Process
Name
|
MLST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Assembly fasta file *.{fasta,fa,fna}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
MLST calls in tsv format *.{tsv}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mlst | Scan contig files against PubMLST typing schemes | https://github.com/tseemann/mlst |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:56:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmlst/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mlst/blobs/sha256:7eaa998f6db3a71de95f8253509e1a22562df2bad6ad555bf152683c61fd7600 |
| Size | 2.1 KB |
| Checksum | sha256:7eaa998f6db3a71de95f8253509e1a22562df2bad6ad555bf152683c61fd7600 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:56:21 (UTC) | 1 | 2.1 KB | - |