Nextflow Registry | nf-core/mirtop/stats@0.0.0-0c7146d

nf-core/mirtop/stats @ 0.0.0-0c7146d

mirtop gff gets the number of isomiRs and miRNAs annotated in the GFF file by isomiR category.

mirna isomir gff

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @atrigila

Maintainers: @atrigila @lpantano

mirtop gff gets the number of isomiRs and miRNAs annotated in the GFF file by isomiR category.

Add the following snippet to your workflow script to include this module.

include { MIRTOP_STATS } from 'nf-core/mirtop/stats'

MIT License

Process

`Name`	`MIRTOP_STATS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`mirtop_gff` file	Mirtop GFF file obtained with mirtop_gff `*.{gff}`

Output 3 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`stats/*_stats.log` file	log file with stats `*.{log}`

#2 txt tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`stats/*_stats.txt` file	TXT file with stats `*.{txt}`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
mirtop	Small RNA-seq annotation	https://github.com/miRTop/mirtop

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:11 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmirtop%2Fstats/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mirtop/stats/blobs/sha256:7491b1629abd74f9f4e219931de6fee756878c1c727164c1acb3ef5fa9c71608
Size	2.4 KB
Checksum	sha256:7491b1629abd74f9f4e219931de6fee756878c1c727164c1acb3ef5fa9c71608
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:11 (UTC)		1	2.4 KB	-