nf-core/miniprot/align @ 0.0.0-0c7146d
Summary
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Get started
Add the following snippet to your workflow script to include this module.
include { MINIPROT_ALIGN } from 'nf-core/miniprot/align'
License
MIT License
Process
Name
|
MINIPROT_ALIGN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pep
file
|
a fasta file contains one or multiple protein sequences |
#2
tuple
meta2
map
|
Groovy Map containing reference information |
|---|---|
ref
file
|
Reference database in FASTA format or miniprot index format. |
Output
3 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gff
file
|
Alignment in gff format *.gff
|
#2
paf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.paf
file
|
Alignment in PAF format *.paf
|
#3
versions_miniprot
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
miniprot
string
|
The tool name |
miniprot --version
eval
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| miniprot | A versatile pairwise aligner for genomic and protein sequences. | https://github.com/lh3/miniprot |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:55:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fminiprot%2Falign/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/miniprot/align/blobs/sha256:20e3b7bc73197cf9874a97cd88f9c415bd19d619ce27ccdfa3b8d67033f8c0ab |
| Size | 2.5 KB |
| Checksum | sha256:20e3b7bc73197cf9874a97cd88f9c415bd19d619ce27ccdfa3b8d67033f8c0ab |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:55:56 (UTC) | 1 | 2.5 KB | - |