nf-core/mindagap/duplicatefinder @ 0.0.0-0c7146d
Summary
marks duplicate spots along gridline edges.
Get started
Add the following snippet to your workflow script to include this module.
include { MINDAGAP_DUPLICATEFINDER } from 'nf-core/mindagap/duplicatefinder'
License
MIT License
Process
Name
|
MINDAGAP_DUPLICATEFINDER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
spot_table
file
|
tsv file containing one spot per row with order x,y,z,gene without column header. *.{tsv,txt}
|
Output
2 channels
#1
marked_dups_spots
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*markedDups.txt
file
|
tab-separated text file containing one spot per row, with duplicated spots labeled with "Duplicated" in their gene column. *.{markedDups.txt}
|
#2
versions_mindagap
tuple
${task.process}
string
|
The name of the process |
|---|---|
mindagap
string
|
The name of the tool |
mindagap.py test -v
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mindagap | Takes a single panorama image and fills the empty grid lines with neighbour-weighted values. | https://github.com/ViriatoII/MindaGap/blob/main/README.md |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:55:41 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmindagap%2Fduplicatefinder/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mindagap/duplicatefinder/blobs/sha256:701c3c755b71930c2af77eb6499650360b2260e251ddd5e611122a0d3e6f99d4 |
| Size | 2.3 KB |
| Checksum | sha256:701c3c755b71930c2af77eb6499650360b2260e251ddd5e611122a0d3e6f99d4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:55:41 (UTC) | 1 | 2.3 KB | - |