Nextflow Registry | nf-core/merquryfk/katcomp@0.0.0-0c7146d

nf-core/merquryfk/katcomp @ 0.0.0-0c7146d

A reimplemenation of Kat Comp to work with FastK databases

fastk k-mer compare

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mahesh-panchal

Maintainers: @mahesh-panchal

A reimplemenation of Kat Comp to work with FastK databases

Add the following snippet to your workflow script to include this module.

include { MERQURYFK_KATCOMP } from 'nf-core/merquryfk/katcomp'

MIT License

Process

`Name`	`MERQURYFK_KATCOMP`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fastk1_hist` file	A histogram files from the program FastK `*.hist`
`fastk1_ktab` file	Histogram ktab files from the program FastK (option -t) `.ktab`
`fastk2_hist` file	A histogram files from the program FastK `*.hist`
`fastk2_ktab` file	Histogram ktab files from the program FastK (option -t) `.ktab`

Output 4 channels

#1 images tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `*.fi.{png,pdf}`
`*.{png,pdf}` file	Comparison of Kmers between sample 1 and 2 in PNG or PDF format. `*.{png,pdf}`

#2 versions_r tuple

`${task.process}` string	The name of the process
`R` string	The name of the tool
`R --version \| sed "1!d; s/.version //; s/ .//"` eval	The expression to obtain the version of the tool

#3 versions_fastk tuple

`${task.process}` string	The name of the process
`fastk` string	The name of the tool
`1.2` string	The expression to obtain the version of the tool

#4 versions_merquryfk tuple

`${task.process}` string	The name of the process
`merquryfk` string	The name of the tool
`1.2` string	The expression to obtain the version of the tool

Tool	Description	Homepage
merquryfk	FastK based version of Merqury	https://github.com/thegenemyers/MERQURY.FK

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:49 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmerquryfk%2Fkatcomp/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/merquryfk/katcomp/blobs/sha256:9450bb404e58baf2f62a064ceff547c32d2309cceb824666af8f14b4f5a5d809
Size	2.9 KB
Checksum	sha256:9450bb404e58baf2f62a064ceff547c32d2309cceb824666af8f14b4f5a5d809
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:49 (UTC)		1	2.9 KB	-