Nextflow Registry | nf-core/merquryfk/hapmaker@0.0.0-0c7146d

nf-core/merquryfk/hapmaker @ 0.0.0-0c7146d

Produces maternal and paternal FastK kmer tables from maternal, paternal and child FastK tables

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @prototaxites @yumisims

Maintainers: @prototaxites @yumisims

Produces maternal and paternal FastK kmer tables from maternal, paternal and child FastK tables

Add the following snippet to your workflow script to include this module.

include { MERQURYFK_HAPMAKER } from 'nf-core/merquryfk/hapmaker'

MIT License

Process

`Name`	`MERQURYFK_HAPMAKER`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing maternal sample information e.g. [ id:'test', single_end:false ]
`matktab` file	maternal ktab files from the program FastK `.ktab`

#2 tuple

`meta2` map	Groovy Map containing paternal sample information e.g. [ id:'test', single_end:false ]
`patktab` file	paternal ktab files from the program FastK `.ktab`

#3 tuple

`meta3` map	Groovy Map containing child sample information e.g. [ id:'test', single_end:false ]
`childktab` file	child ktab files from the program FastK `.ktab`

Output 4 channels

#1 mat_hap_ktab tuple

`meta` map	Groovy Map containing maternal sample information e.g. [ id:'test', single_end:false ]
`${input_mat}.hap.ktab` file	Maternal haplotype-specific k-mer table files generated by HAPmaker from FastK tables. `.hap.ktab`

#2 pat_hap_ktab tuple

`meta2` map	Groovy Map containing paternal sample information e.g. [ id:'test', single_end:false ]
`${input_pat}.hap.ktab` file	Paternal haplotype-specific k-mer table files generated by HAPmaker from FastK tables. `.hap.ktab`

#3 versions_fastk tuple

`${task.process}` string	Name of the process
`fastk` string	Name of the tool
`1.2` string	The expression to obtain the version of the tool

#4 versions_merquryfk tuple

`${task.process}` string	Name of the process
`merquryfk` string	The name of the tool
`1.2` string	The expression to obtain the version of the tool

Tool	Description	Homepage
merquryfk	FastK based version of Merqury	https://github.com/thegenemyers/MERQURY.FK

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:47 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmerquryfk%2Fhapmaker/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/merquryfk/hapmaker/blobs/sha256:77bf0b2724b822ae1e11490c95a558d107002a35ad3d130e2ad8acc2158b8e8a
Size	3.0 KB
Checksum	sha256:77bf0b2724b822ae1e11490c95a558d107002a35ad3d130e2ad8acc2158b8e8a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:47 (UTC)		1	3.0 KB	-