Nextflow Registry | nf-core/medaka@0.0.0-0c7146d

nf-core/medaka @ 0.0.0-0c7146d

A tool to create consensus sequences and variant calls from nanopore sequencing data

assembly polishing nanopore

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @avantonder

Maintainers: @avantonder

A tool to create consensus sequences and variant calls from nanopore sequencing data

Add the following snippet to your workflow script to include this module.

include { MEDAKA } from 'nf-core/medaka'

MIT License

Process

`Name`	`MEDAKA`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	List of input nanopore fasta/FastQ files `*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}`
`assembly` file	Genome assembly `*.{fasta,fa}`

Output 2 channels

#1 assembly tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.fa.gz` file	Polished genome assembly `*.fa.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
medaka	Neural network sequence error correction.	https://nanoporetech.github.io/medaka/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:31 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmedaka/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/medaka/blobs/sha256:649907dee78288680ba908191d6545f78e0f719d6fd305fbea0f9fe0c65533c4
Size	2.2 KB
Checksum	sha256:649907dee78288680ba908191d6545f78e0f719d6fd305fbea0f9fe0c65533c4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:31 (UTC)		1	2.2 KB	-