nf-core/maxquant/lfq @ 0.0.0-0c7146d
Summary
Run standard proteomics data analysis with MaxQuant, mostly dedicated to label-free. Paths to fasta and raw files needs to be marked by "PLACEHOLDER"
Get started
Add the following snippet to your workflow script to include this module.
include { MAXQUANT_LFQ } from 'nf-core/maxquant/lfq'
License
MIT License
Process
Name
|
MAXQUANT_LFQ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
fasta file with protein sequences *.{fasta}
|
paramfile
file
|
MaxQuant parameter file |
raw
file
|
raw files with mass spectra *.{raw,RAW,Raw}
|
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software version versions.yml
|
|---|
#2
maxquant_txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/*.txt
file
|
tables with peptides and protein information *.{txt}
|
| Tool | Description | Homepage |
|---|---|---|
| maxquant | MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted. | https://www.maxquant.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:54:16 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmaxquant%2Flfq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/maxquant/lfq/blobs/sha256:02570cfc27f68c302b99d69fb567aa6a9704e52450329f31b92ecfce7975a8a3 |
| Size | 2.9 KB |
| Checksum | sha256:02570cfc27f68c302b99d69fb567aa6a9704e52450329f31b92ecfce7975a8a3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:54:16 (UTC) | 1 | 2.9 KB | - |