nf-core/mat2json @ 0.0.0-0c7146d
Updating the docker container and making a new module release
To update this tool :
- Navigate tho the mat2json repository, go to the latest release and get the link and sha256 checksum.
- Edit the Dockerfile in the following lines:
- ARG MAT2JSON_VERSION="1.0.0"
+ ARG MAT2JSON_VERSION="<New version>"
- ARG MAT2JSON_URL="https://github.com/qbic-pipelines/mat2json/releases/download/v1.0.0/mat2json"
+ ARG MAT2JSON_UR="<New release>"
- ARG MAT2JSON_SHA256="216cac1716c761ebcdde415726762ec462cc79eda7daf3e320549b8765f097e5"
+ ARG MAT2JSON_SHA256="<Manual SHA256 of binary file>"
- Open a PR against nf-core/modules directly, push the changes, and the Dockerfile should be built and uploaded to
quay.io/nf-core/mat2json!
Process
Name
|
MAT2JSON |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
matfile
file
|
matlab file *.{mat}
|
process
string
|
Name of the process to be used in the output file name and as a tag |
|---|
Output
2 channels
#1
converted_file
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${process}/*/*.*
file
|
JSON or CSV file containing the the data from the input .mat file *.{json,csv}
|
#2
versions_mat2json
tuple
${task.process}
string
|
The name of the process |
|---|---|
mat2json
string
|
The name of the tool |
1.0.0
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mat2json | Converts matlab .mat files into json or csv files. | https://github.com/qbic-pipelines/mat2json |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 4e8e48c04e24c2159a5589a36bae0f038809cd48 |
| Release Date | 08 Apr 2026 18:54:12 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmat2json/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mat2json/blobs/sha256:a2a95cb8cb3b3b6f8cbd1d91f9ebb73b51b04760cae18e8ef79a81e63341240e |
| Size | 2.9 KB |
| Checksum | sha256:a2a95cb8cb3b3b6f8cbd1d91f9ebb73b51b04760cae18e8ef79a81e63341240e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:54:12 (UTC) | 1 | 2.9 KB | - |